REFRESH Bioinformatics Group

Recent news

2018

2018-12-13

Preprint of the paper describing GTShark was published in bioRxiv.org.

2018-12-11

Version 1.0 of GTShark, out genotypes compressor is available.

2018-11-08

Paper describing Whisper was published in Bioinformatics journal.

2018-07-13

Paper describing CoMSA was published in Bioinformatics journal.

2018-07-13

Version 1.1 of Whisper (our mapper) is available.

2018-07-09

Paper describing Kmer-db was published in Bioinformatics journal.

2018-06-12

Version 1.1 of Kmer-db, our tool for estimation of evolutionary distances in a collection of genomes is available.

2018-04-12

Version 1.1 of CoMSA, our new compressor of multiple sequence alignment files is available.

2018-03-29

Paper describing FaStore was published in Bioinformatics journal.

2018-02-12

Paper describing Kmer-db, our tool for estimation of evolutionary distances in a collection of genomes is deposited in bioRxiv.org. Version 1.0 of the software is available.

2018-02-11

Paper describing GTC, our genotype data compressor, is published in Bioinformatics.


2017

2017-12-28

Preprint of a paper describing Whisper, our new read mapper is available.

Preprint of a paper describing MSAC, our new compressor of multiple sequence alignment files is available.

2017-12-27

Source codes of Whisper, our new read mapper are available.

Source codes of MSAC, our new compressor of multiple sequence alignment files are available.

2017-07-25

Preprint of a paper describing FaStore, our new compressor of FASTQ files is available.

2017-05-10

Poster describing Whisper was presented at The Biology of Genomes Conference (Cold Spring Harbor, NY)

2017-05-04

Paper describing new version of KMC was published in Bioinformatics.

2017-04-28

Version 1.0 (first public release) of GTC, our genotype databases compressor is available.

2017-02-05

Version 1.2 of FAMSA, our new multiple sequence aligner is available.

2017-01-31

Paper describing QuickProbs 2 was published in Scientific Reports.

2017-01-29

Version 3.0 of KMC is available.

2017-01-05

Paper describing RECKONER was published in Bioinformatics.


2016

2016-12-31

Version 0.2.1 of RECKONER, our read corrector, was released.

2016-09-27

Paper describing FAMSA was published in Scientific Reports.

2016-08-17

Version 0.2 of RECKONER, our read corrector, was released.

2016-06-30

Version 1.1 of FAMSA, our new multiple sequence aligner is available.

2016-03-23

Version 1.0 of FAMSA, our new multiple sequence aligner is available.

Draft of new paper describing version 1.0 of FAMSA is also available.


2015

2015-12-23

Version 2.0 of QuickProbs is available.

Draft of new paper describing version 2.0 of QuickProbs is also available.

2015-09-30

Version 0.1 of RECKONER is available.

2015-09-17

Version 1.2 of PgSA is available.

2015-09-11

Version 2.3 of KMC is available.

2015-07-16

Paper describing PgSA was published in PLOS ONE.

2015-06-25

Paper describing GDC 2, our compression of collections of genomes, was published in Scientific Reports.

2015-05-07

Version 1.1 of PgSA is available.

2015-04-17

Paper describing CoMeta, our metagenomic data classifier was published in PLOS ONE.

2015-04-16

Version 2.2 of KMC is available.

2015-04-07

Version 1.0 of MuGI is available.

2015-03-05

Version 2.0 of GDC is available.

2015-02-13

Version 1.0 of PgSA is available.

2015-01-23

Version 2.1.1 of KMC is available.

2015-01-20

Paper describing KMC 2, our k-mer counting program was published in Bioinformatics.


2014

2014-12-22

Paper describing ORCOM, our FASTQ files compressor was published in Bioinformatics.

2014-12-18

Version 2.1 of KMC is available.

2014-11-28

Version 0.3 of CoMeta is available.

2014-11-26

Version 1.0 of ORCOM is available.

2014-10-07

Paper describing MuGI, our index for collection of genomes was published in PLOS ONE.

2014-08-14

Version 0.1 of MuGI is available.

2014-07-07

Version 2.0 of KMC is available.

2014-05-16

Paper describing KMC, our k-mer counting program was published in BMC Bioinformatics.

2014-04-19

Version 1.02 of QuickProbs is available.

2014-04-18

Paper describing DSRC 2, our FASTQ files compressor was published in Bioinformatics.

2014-03-31

Version 2.0 RC2 of DSRC is available.

2014-03-28

Version 1.0 of KMC is available.

2014-02-25

Paper describing QuickProbs, our multiple sequence alignment program was published in PLOS ONE.


2013

2013-12-02

Version 2.0 RC of DSRC is available.

2013-08-21

Paper describing TGC, our genome compressor was published in Bioinformatics.

2013-07-05

Version 1.0 of TGC is available.


2012

2012-11-29

Version 0.3 of KMC is available.

2012-05-23

Version 1.02 of DSRC is available.

2012-05-11

Version 1.01 of DSRC is available.

2012-05-01

Version 1.0 of DSRC is available.

2012-01-26

Version 0.1 of KMC is available.


2011

2011-09-05

Paper describing GDC, our genome compressor was published in Bioinformatics.

2011-08-11

Version 0.3 of GDC is available.

2011-05-16

Version 0.2 of GDC is available.

2011-03-01

Version 0.1 of GDC is available.

2011-01-19

Paper describing DSRC, our FASTQ files compressor was published in Bioinformatics.


2010

2010-12-18

Version 0.3 of DSRC is available.

2010-11-08

Version 0.2 of DSRC is available.